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Welcome to Metabolonote


Metabolonote is a database/management system that manages "metadata" for experimental data obtained through the metabolomics studies.

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Browse Metadata

The list of published metadata.

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API

Retrieve Metabolonote data from external programs using these API functions.

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Registering and Editing Metadata

Register your own metadata by creating your login account (free).

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For System Administrators

Build a local Metabolonote system by downloading source code files available here.

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Help

Click here for more details about Metabolonote.

News / Announcement

The server maintenance on June 22-23 was finished.

Concept and Features of Metabolonote

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Metadata is detailed information, such as experimental methods and analysis conditions, associated with experimental data. Metabolomics is a research field that exhaustively studies metabolism compounds. Since each research phase of sample preparation, instrumental analysis, and data analysis is extremely complicated, metabolomics experimental data is usually accompanied with a vast amount of metadata.

Metabolonote is a specialized database system for metadata management. This system aims to promote the publication and utilization of metabolomics data by simplifying the metadata record process. Separation of the management of metadata from experimental data has the following two advantages: (1) Multiple databases can share the same metadata, and (2) Data can easily be publicized. Read more...

Data Structure and ID Notation

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Metabolonote manages metadata by separating it mainly into four layers. According to these layer structures, IDs are given to metadata.

(Example) Metadata with the ID "SE1_S01_M01_D01" assigned is described on the Wiki page entitled "SE1:/S01/M01/D01" which can be accessed through the following URL. http://webs2.kazusa.or.jp/metabolonote/index.php/SE1:/S01/M01/D01

To learn more about browsing Metabolonote, check the rules for assigning IDs and information on how to name each Wiki page. Read more...

Related Web Sites

Komics logo.png KOMICS: The portal site of metabolomics researches in Kazusa DNA Research Insititute.

Massbase logo2.png MassBase: One of the biggest repository of "raw" data files of MS based metabolomics studies.

Komicmarket logo.png KomicMarket: The database for the annotations and intensities of the metabolite peaks detected in the samples.

NewKomicMarketTmp.png KomicMarket2 temporary website: Distributes metabolome data as files in TogoMD format.

Biomassbank logo.png Bio-MassBank: The library of mass spectrum from the analyses of biological samples.

Massbank-logo row.gif MassBank: The libarary of mass spectrum from the analyses of standard chemicals.

Knapsack logo2.png KNApSAcK family: A growing huge database of natural compounds and their related information such as the origin of the organisms, biological functions, foods, and health.

Contact

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Metabolonote was developed by the research team at Kazusa DNA Research Institute, in the research project entitled "Development of Metabolome Database (Chief: Prof. Shigehiko Kanaya, Nara Institute of Science and Technology)" supported by National Bioscience Database Center (NBDC) of Japan Science and Technology Agency (JST).More...

For any futher questions or comments, please contact us at the e-mail address below.

E-mail: metabolonote AT kazusa.or.jp
(Please change the "@" to one-byte character size)

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