SE40:/AM1

Sample Set Information

ID	SE40
Title	Comparison of fruit metabolites among tomato cultivars
Description	Investigation of Tomato fruits metabolites. 28 cultivers and 3 replicates data are examined.
Authors	Takeshi Ara 1, Shingo Takahashi 1,3, Naoko Waki 1,3, Nozomu Sakurai 2, Haruya Takahashi 1, Shinsuke Mohri 1, Kunimi Suda 2, Keishi Ozawa 2, Takisawa Rihito 4, Akira Kitajima 4, Yasuki Matsumura 1, Teruo Kawada 1, Daisuke Shibata 1, 2, 1:Graduate School of Agriculture, Kyoto University, Japan, 2:Kazusa DNA Research Institute, Kazusa Kamatari 2-6-7, Kisarazu, Chiba 292-0818, Japan, 3:Kagome Co., Ltd., Japan, 4:Experimental Farm of Kyoto University, Japan
Reference	Ara T. et al. (2021) Plant Direct 5(4) e00318
Comment	version 1

The original paper is available at Plant Direct

TOMATOMET: http://metabolites.in/tomato-fruits/

PGDBj: http://pgdbj.jp/plantdb/plantinfo.html?ln=en&cmd=entry&ppid=t4081

Annotation Method Details Information

ID	AM1
Title	PowerGet annotation
Description	In annotation process, KEGG, KNApSAcK and LipidMAPS are used for primary database search. Peaks with no hit to these databases are then selected to secondary search using EX-HR2 (http://webs2.kazusa.or.jp/mfsearcher/) databases. After the database search processes, each database hits are manually checked to assign a compound name or compound category name (alkaloids, aminocarboxylic acids, carotenoids, coumarins, fatty acid derivatives, flavonoids, glycolipids, iridoids, nucleotides, organic acids, peptides, phenolics, porphyrins, phospholipids, steroids, sugars, terpenoids and others). In case of no compound name or chemical category name can assign, predicted molecular formulas are used for the annotation. MS/MS patterns was used to suggest functional groups attached to the compounds such as -OH, -COOH, -NH2, -C6H12O6. MassBank (http://www.massbank.jp/) and MS-MS Fragment Viewer (http://webs2.kazusa.or.jp/msmsfragmentviewer/) are used for annotation and identification of the compounds. Retension time of 56 authentic chemicals (13-OxoODA, 4-Hydroxycoumarin, 6-Hydroxycoumarin, 7-Hydroxycoumarin, 9-OxoODA, Adenine, Adenosine, Astilbin, Caffeine, Ceramide (C40H75N1O9), Chlorogenic acid, Citrate, Cytidine, Engeletin, Eriodictyol 7-O-glucoside, Eriodictyol, Fustin, GABA, gamma-L-Glutamyl-L-cysteine, Glutathione, Guanosine, Hesperetin, Inosine, Isocitrate, L-Arginine, L-Asparagine, L-Aspartate, L-Cysteine, L-Glutamate, L-Glutamine, L-Histidine, L-Isoleucine, L-Kynurenine, L-Leucine, L-Lysine, L-Methionine, L-Norleucine, L-Phenylalanine, L-Proline, L-Serine, L-Threonine, L-Tryptophan, L-Tyrosine, L-Valine, NAD, Naringenin chalcone, Nicotinamide, Nicotinate, Pantothenate, Phloretin, Prunin, Rutin, S-Adenosyl-L-methionine, Tomatine, UMP, Uridine) are used for annotation and identification of the compounds.
Comment_of_details